Saves the R-object containing the fluorescence distributions (the 'fdmat' object) in the standard data export / rawdata folder.
Arguments
- fdmat
An object of
class-fdmatas produced bymakefdmat.- fns
Character length one or NULL. Possible character to be added to the filename.
- expo.folder
Character length one. The name of the folder where exported data should reside. If left at the default '.', the value as defined in the settings file (key 'foN_rawData') will be used.
- verbose
Logical. If status messages should be displayed. If left at the default '.', the value as defined in the settings file (key 'dV_verbose') will be used.
Value
Invisible NULL; is called for its side effect, i.e. to save an
object of class-fdmat to file.
Details
The name of the saved file is put together using the default name for data exports (settings.R file key 'fiN_dataExport'), the name and type of the gating strategy, the character 'fdmatObj' and a possible filename suffix as defined in 'fns'.
See also
Other Accessory functions:
applyBandpass(),
checkRepairFcsFiles(),
cutFdmatToGate(),
exportFdmatData(),
fd_load(),
genfs(),
repairSID(),
repairVolumes()
Examples
td <- tempdir()
data_source <- "https://github.com/bpollner/data/raw/main/flowdex_examples/flowdex_examples.zip"
check_download_data(td, data_source)
exp_home <- paste0(td, "/flowdex_examples")
old_wd <- getwd()
setwd(exp_home)
#
assign("get_settings_from_flowdex_package_root", TRUE, pos=.GlobalEnv)
# only required to make the examples run automatically
# you should not call 'assign' if you run the examples manually
# the effect of setting 'get_settings_from_flowdex_package_root' to TRUE
# is that the file 'flowdex_settings.R' in 'root' of the installed package
# 'flowdex' will be sourced instead of the one in the user-defined location.
#
fdmat <- flowdexit(stf = FALSE)
#> Reading in fcs files... ok.
#> Producing gating set... Applying fjbiexp transformation... ok.
#> Gating: (1 gate)
#> done!
#> DNA+: Extracting binned data on FITC.A (res=220) and recalc. to volume... ok.
#> Exporting data (1 gate) to xlsx...ok.
fd_save(fdmat, fns="_foo")
#> fdmat-object saved.
#
setwd(old_wd)