Generate the required folder structure, and possibly copy the available templates (gate definitions, gating strategy, dictionary).
Usage
genfs(where = getwd(), copy_templates = TRUE)Arguments
- where
Character length one, holding a valid path. Defaults to the current working directory.
- copy_templates
Logical, if available templates should be copied into the folder 'templates'.
Value
No return value, called for its side effects, i.e. the creation of the required folder structure.
See also
Other Accessory functions:
applyBandpass(),
checkRepairFcsFiles(),
cutFdmatToGate(),
exportFdmatData(),
fd_load(),
fd_save(),
repairSID(),
repairVolumes()
Examples
td <- tempdir()
data_source <- "https://github.com/bpollner/data/raw/main/flowdex_examples/flowdex_examples.zip"
check_download_data(td, data_source)
exp_home <- paste0(td, "/flowdex_examples")
old_wd <- getwd()
setwd(exp_home)
#
assign("get_settings_from_flowdex_package_root", TRUE, pos=.GlobalEnv)
# only required to make the examples run automatically
# you should not call 'assign' if you run the examples manually
# the effect of setting 'get_settings_from_flowdex_package_root' to TRUE
# is that the file 'flowdex_settings.R' in 'root' of the installed package
# 'flowdex' will be sourced instead of the one in the user-defined location.
#
genfs(exp_home)
#
setwd(old_wd)