Load the R-object containing the fluorescence distributions (the 'fdmat' object) from the standard data export / rawdata folder.
Arguments
- fn
Character length one, the name of the file.
- expo.folder
The name of the folder where the file should be looked for. If left at the default '.', the value as defined in the settings file (key 'foN_rawData') will be used.
- verbose
Logical. If status messages should be displayed. If left at the default '.', the value as defined in the settings file (key 'dV_verbose') will be used.
Value
An object of class-fdmat as produced by
makefdmat or flowdexit.
Details
If 'fn' is left at NULL, the file containing the default name for exported data and gating strategy is being attempted to load.
See also
Other Accessory functions:
applyBandpass(),
checkRepairFcsFiles(),
cutFdmatToGate(),
exportFdmatData(),
fd_save(),
genfs(),
repairSID(),
repairVolumes()
Examples
td <- tempdir()
data_source <- "https://github.com/bpollner/data/raw/main/flowdex_examples/flowdex_examples.zip"
check_download_data(td, data_source)
exp_home <- paste0(td, "/flowdex_examples")
old_wd <- getwd()
setwd(exp_home)
#
assign("get_settings_from_flowdex_package_root", TRUE, pos=.GlobalEnv)
# only required to make the examples run automatically
# you should not call 'assign' if you run the examples manually
# the effect of setting 'get_settings_from_flowdex_package_root' to TRUE
# is that the file 'flowdex_settings.R' in 'root' of the installed package
# 'flowdex' will be sourced instead of the one in the user-defined location.
#
fdmat <- flowdexit()
#> Reading in fcs files... ok.
#> Producing gating set... Applying fjbiexp transformation... ok.
#> Gating: (1 gate)
#> done!
#> DNA+: Extracting binned data on FITC.A (res=220) and recalc. to volume... ok.
#> Exporting data (1 gate) to xlsx...ok.
#> fdmat-object saved.
# and load the same again on an other shiny day...
fdmat <- fd_load()
#> The fdmat-object with the name `flscData_gateStrat.xlsx_fdmatObj` was loaded.
#
setwd(old_wd)